Index

_

__getitem__() (nuee.diversity.DiversityResult method) __init__() (nuee.diversity.DiversityResult method) (nuee.ordination.CCA method) (nuee.ordination.NMDS method) (nuee.ordination.OrdinationResult method) (nuee.ordination.PCA method) (nuee.ordination.RDA method)

__len__() (nuee.diversity.DiversityResult method)

A

adonis2() (in module nuee) (in module nuee.dissimilarity) alr() (in module nuee) (in module nuee.composition) alr_inv() (in module nuee) (in module nuee.composition)

anosim() (in module nuee) (in module nuee.dissimilarity) anova_cca() (in module nuee) (in module nuee.permutation)

B

BCI() (in module nuee.datasets) betadisper() (in module nuee) (in module nuee.dissimilarity)

biplot() (in module nuee) (in module nuee.plotting) (nuee.ordination.OrdinationResult method)

C

ca() (in module nuee) call (nuee.ordination.OrdinationResult attribute) CCA (class in nuee.ordination) cca() (in module nuee) (in module nuee.ordination) center() (in module nuee) (in module nuee.composition) centralize() (in module nuee) (in module nuee.composition)

closure() (in module nuee) (in module nuee.composition) clr() (in module nuee) (in module nuee.composition) clr_inv() (in module nuee) (in module nuee.composition) converged (nuee.ordination.OrdinationResult attribute) cumulative_proportion (nuee.ordination.OrdinationResult property)

D

diversity() (in module nuee) (in module nuee.diversity)

DiversityResult (class in nuee.diversity) dune() (in module nuee.datasets) dune_env() (in module nuee.datasets)

E

eigenvalues (nuee.ordination.OrdinationResult attribute) envfit() (in module nuee) (in module nuee.ordination)

eps (nuee.ordination.NMDS attribute) estimateR() (in module nuee) evenness() (in module nuee) (in module nuee.diversity)

F

fisher_alpha() (in module nuee) (in module nuee.diversity) fit() (nuee.ordination.CCA method) (nuee.ordination.NMDS method) (nuee.ordination.OrdinationMethod method) (nuee.ordination.PCA method) (nuee.ordination.RDA method)

G

get_scores() (nuee.ordination.OrdinationResult method)

I

ilr() (in module nuee) (in module nuee.composition) ilr_inv() (in module nuee) (in module nuee.composition)

impute_missing() (in module nuee) (in module nuee.composition) inner() (in module nuee) (in module nuee.composition)

L

lda() (in module nuee)

M

mantel() (in module nuee) (in module nuee.dissimilarity) mantel_partial() (in module nuee) max_iter (nuee.ordination.NMDS attribute) mean() (nuee.diversity.DiversityResult method) metaMDS() (in module nuee) (in module nuee.ordination) mite() (in module nuee.datasets)

mite_env() (in module nuee.datasets) module nuee nuee.composition nuee.datasets mrpp() (in module nuee) (in module nuee.dissimilarity) multiplicative_replacement() (in module nuee) (in module nuee.composition)

N

n_components (nuee.ordination.NMDS attribute) n_init (nuee.ordination.NMDS attribute) ndim (nuee.ordination.OrdinationResult attribute) NMDS (class in nuee.ordination) nobj (nuee.ordination.OrdinationResult attribute)

nuee module nuee.composition module nuee.datasets module

O

ordiellipse() (in module nuee) OrdinationMethod (class in nuee.ordination) OrdinationResult (class in nuee.ordination) ordiplot() (in module nuee) (in module nuee.plotting)

ordispider() (in module nuee) ordistep() (in module nuee) (in module nuee.ordination)

P

PCA (class in nuee.ordination) pca() (in module nuee) (in module nuee.ordination) permanova() (in module nuee) (in module nuee.permutation) permtest() (in module nuee) (in module nuee.permutation) permutest() (in module nuee) (in module nuee.permutation) plot() (nuee.diversity.DiversityResult method) plot_betadisper() (in module nuee) plot_dissimilarity() (in module nuee) (in module nuee.plotting) plot_diversity() (in module nuee) (in module nuee.plotting)

plot_ordination() (in module nuee) (in module nuee.plotting) plot_rarecurve() (in module nuee) (in module nuee.plotting) plot_specaccum() (in module nuee) points (nuee.ordination.OrdinationResult attribute) poolaccum() (in module nuee) power() (in module nuee) (in module nuee.composition) procrustes() (in module nuee) (in module nuee.ordination) proportion_explained (nuee.ordination.OrdinationResult property) protest() (in module nuee) (in module nuee.dissimilarity)

R

rarecurve() (in module nuee) (in module nuee.diversity) rarefy() (in module nuee) (in module nuee.diversity) RDA (class in nuee.ordination)

rda() (in module nuee) (in module nuee.ordination) renyi() (in module nuee) (in module nuee.diversity) replace_zeros() (in module nuee) (in module nuee.composition)

S

sbp_basis() (in module nuee) (in module nuee.composition) scores() (nuee.ordination.OrdinationResult method) shannon() (in module nuee) (in module nuee.diversity) simpson() (in module nuee) (in module nuee.diversity)

specaccum() (in module nuee) species (nuee.ordination.OrdinationResult attribute) specnumber() (in module nuee) (in module nuee.diversity) std() (nuee.diversity.DiversityResult method) stress (nuee.ordination.OrdinationResult attribute) summary() (nuee.diversity.DiversityResult method)

V

varechem() (in module nuee.datasets) varespec() (in module nuee.datasets)

vegdist() (in module nuee) (in module nuee.dissimilarity)